Code

HiM acquisition
python (qudi-HiM):  https://github.com/NollmannLab/qudi-HiM or see published version at zenodo.
Labview: https://github.com/NollmannLab/HiMacquisitionSoft.git

HiM analysis
pyHiM: https://github.com/marcnol/pyHiM
MATLAB: http://dx.doi.org/10.17632/5f5hd9yj3z.1#folder-26d1f8c0-fc58-4b87-8c4f-cd8fa294a555

spt-PALM analysis
https://github.com/jbfiche/sptPALM.git

Code associated to Goetz, et al, Nature Communications, 2022.
https://zenodo.org/record/6811576

Code associated to Espinola, Goetz, et al, Nature Genetic, 2021.
https://github.com/NollmannLab/Espinola-Goetz-2021.git

DCIMG to TIFF conversion
https://github.com/jbfiche/DCIMG_to_TIFF_conversion.git

MERFISH simulations
https://github.com/jbfiche/merFISH_simulation.git

Single-particle analysis
https://github.com/NollmannLab/3DreconstructionSMLM.git

Visualisation of PALM data
https://github.com/NollmannLab/vPALM2.git

Data

Goetz, et al, Nature Communications, 2022.
https://zenodo.org/record/6861355

Minimal dataset to test multiplexed DNA imaging (Hi-M) software pipelines
https://zenodo.org/record/6351755

Espinola, Goetz, et al, Nature Genetic, 2021.
https://github.com/NollmannLab/Espinola-Goetz-2021.git

Cardozo et al., Molecular Cell, 2019
http://dx.doi.org/10.17632/5f5hd9yj3z.1#folder-26d1f8c0-fc58-4b87-8c4f-cd8fa294a555

Publications

Find PDFs for our publications in our Github repository here:
https://github.com/marcnol/NollmannLabPublications.git

Websites

Electronic Labbooks