NOLLMANN LAB
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      • Chromosome structure
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      • Bacterial gliding
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      • SMLM microscope
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Code

Open-Science Framework bacto_tracker project.HiM acquisition
python (qudi-HiM):  https://github.com/NollmannLab/qudi-HiM or see published version at zenodo.
Labview: https://github.com/NollmannLab/HiMacquisitionSoft.git


See also our open-science framework Hi-M OSF project for data, archived code, and UNET networks.

HiM analysis
pyHiM: https://github.com/marcnol/pyHiM
MATLAB: http://dx.doi.org/10.17632/5f5hd9yj3z.1#folder-26d1f8c0-fc58-4b87-8c4f-cd8fa294a555

See also our open-science framework Hi-M OSF project for data, archived code, and UNET networks.

spt-PALM analysis
https://github.com/jbfiche/sptPALM.git

Code associated to Goetz, et al, Nature Communications, 2022.
https://zenodo.org/record/6811576

Code associated to Espinola, Goetz, et al, Nature Genetics, 2021.
https://github.com/NollmannLab/Espinola-Goetz-2021.git

bacto_tracker
Open-Science Framework bacto_tracker OSF project.

DCIMG to TIFF conversion
https://github.com/jbfiche/DCIMG_to_TIFF_conversion.git

MERFISH simulations
https://github.com/jbfiche/merFISH_simulation.git

Single-particle analysis
https://github.com/NollmannLab/3DreconstructionSMLM.git

Visualisation of PALM data
https://github.com/NollmannLab/vPALM2.git

Data

Rombouts, et al., Open Research Europe, 2022
Open-Science Framework bacto_tracker project.

Goetz, et al, Nature Communications, 2022.

https://zenodo.org/record/6861355

Minimal dataset to test multiplexed DNA imaging (Hi-M) software pipelines
https://zenodo.org/record/6351755

Espinola, Goetz, et al, Nature Genetics, 2021.
https://github.com/NollmannLab/Espinola-Goetz-2021.git

Cardozo et al., Molecular Cell, 2019
http://dx.doi.org/10.17632/5f5hd9yj3z.1#folder-26d1f8c0-fc58-4b87-8c4f-cd8fa294a555

Publications

Find PDFs for our publications in our Github repository here:
https://github.com/marcnol/NollmannLabPublications.git

Websites

Electronic Labbooks

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  • Home
    • News
    • Lab meetings
    • HelpDesk
  • Research
    • DNA organization and segregation at super-resolution >
      • Chromosome structure
      • Resources and background
    • Molecular Motors >
      • SpoIIIE and FtsK
      • Bacterial gliding
    • Technologies >
      • SRM
      • SMLM microscope
    • Software
  • Lab members
    • Lab pictures
  • Publications
    • bactoTracker
  • Resources
  • Positions
  • Funding
  • Contact